We are a research group jointly based in Dalhousie’s Faculty of Computer Science and the Faculty of Medicine’s Department of Community Health & Epidemiology.
Our aim is to develop and collaboratively apply data-driven methods to try and mitigate health and social crises. This is focused on two main areas: genomic epidemiology of infectious diseases and inter-disciplinary collaborations with domain experts
Specifically, this former work involves developing and applying novel microbial bioinformatics and machine learning approaches to better understand the diagnosis, evolution, and dynamics of infectious diseases. We largely work on problems related to antimicrobial resistance (AMR) and, in the last couple of years, the COVID-19 pandemic with national and international consortia of clinicians and public health experts. Whereas, our broader collaborative data science works includes work exploring online radicalisation with sociologists, patient preference at refugee clinics, and autism-related language-use.
For more details about specific projects, collaborators, and funding sources see Research).
We are located in Dalhousie University and have strong ties to the Shared Hospital Lab located at Sunnybrook Health Sciences Centre, the CARD, the Canadian Food Inspection Agency, and the Public Health Agency of Canada. This also includes national and international public health consortia such as IRIDA, CanCOGeN, and PHA4GE.
We are looking for new enthusiastic and creative PhD students to join the team!
We are grateful for funding from Dalhousie University, CIHR, NSERC, CANMOD, Genome Canada, SSHRC, and (via PHA4GE) the BMGF.

Ash Porter, David Mahoney, Bonface Onyango were all selected to give oral presentations (with Precious Osadebamwen presenting a poster) at ZAMBI
Deanna Tait was selected to give an extended oral presentation on their Avian Influenza GWAS work at ZAMBI
We organised a new national ~160 person Zoonosis, AMR, and Bioinformatics conference: ZAMBI
Angela McLaughlin presented her work on HPAI genotyping systems at 33rd International Dynamics & Evolution of Human Viruses and Canadian Society of Virology meetings
Gustavo Sganzerla Martinez’s paper on mpox clade prediction was posted as a preprint on medRxiv
Work led by Lauren Crawshaw and Jeff Bowman on trying to find and characterise whether B.1.641 had formed a reservoir in wild deer was published in FACETS
David Mahoney presented his work on SubGraphia at the AMR: Genomics, Big Data, and Emerging Techologies at thew Wellcome Genome Campus
Work led by the Brinkman lab characterising AMR mobility patterns across 8000 bacterial species was released on BioRxiv
Clayton Hall’s paper (supervised by Xena Li) evaluating genotype-phenotype correlation in beta-lactam/beta-lactamase inhibitor pairs in Pseudomonas was published in JID