Publications

This list is generated from our Google Scholar profile; lab members are shown in bold.

All publications

2026

1. Testing for a wildlife reservoir of divergent SARS-CoV-2 in white-tailed deer Lauren Crawshaw, Jonathon D. Kotwa, Simon P. Jeeves, Courtney Loomer, Antonia Dibernardo, Ashley Stewart, Sasha L. Newar, Emily Chien, Winfield Yim, Peter Kruczkiewicz, Oksana Vernygora, Oliver Lung, Finlay Maguire, and 7 others FACETS · 1 citation
2. Genomic, antigenic and transmission dynamics of influenza A(H3N2) subclade K in Canada, early 2025/26 season George S. Long, Thomas Braukmann, Nicholas Waglechner, Patryk Aftanas, Alex Marchand‐Austin, Julianne V. Kus, Shawn T. Clark, Kevin Katz, Maan Hasso, Finlay Maguire, Samir N Patel, Samira Mubareka, Venkata R Duvvuri medRxiv · 1 citation
3. Genomic analysis and evolutionary insights of betacoronaviruses in wild Peromyscus mice and other terrestrial small mammals Jonathon D. Kotwa, Simon P. Jeeves, Lauren Crawshaw, Winfield Yim, Lily Yip, Kaela Beauclerc, Phuc Tran, Will Zhang, Albrecht I. Schulte‐Hostedde, Bradley Pickering, David L. Pearl, Heather Murphy, Finlay Maguire, and 3 others npj Viruses
4. CladePredictor–MPXV: An alignment-free Artificial Intelligence-based classifier of complete and partial mpox virus genomes Gustavo Sganzerla Martinez, Ali Toloue Ostadgavahi, Mansi Dutt, Finlay Maguire, Lourdes Peña‐Castillo, David J Kelvin, Anuj Kumar medRxiv
5. Analysing antimicrobial resistance mobility patterns using a diverse dataset of over 8000 bacterial species Baofeng Jia, Brian Alcock, Amogelang R. Raphenya, Jason Spence, Finlay Maguire, Robert G. Beiko, Andrew G. McArthur, Claire Bertelli, Fiona S.L. Brinkman bioRxiv (Cold Spring Harbor Laboratory)

2025

1. When Help Is Harm: Health, Lookism and Self‐Improvement in the Manosphere Michael Halpin, Meghan Gosse, Katharine Yeo, Ingrid Handlovsky, Finlay Maguire Sociology of Health & Illness · 41 citations
2. argNorm: normalization of antibiotic resistance gene annotations to the Antibiotic Resistance Ontology (ARO) Svetlana Ugarčina Perović, Vedanth Ramji, Hui Chong, Yiqian Duan, Finlay Maguire, Luís Pedro Coelho Bioinformatics · 12 citations
3. Functional and Structural Characterization of Treatment-Emergent Nirmatrelvir Resistance Mutations at Low Frequencies in the Main Protease (Mpro) Reveals a Unique Evolutionary Route for SARS-CoV-2 to Gain Resistance Natalie M. Deschenes, Jimena Pérez‐Vargas, Zoë Zhong, Merrilee Thomas, Calem Kenward, W.A. Mosimann, L.J. Worrall, Nicholas Waglechner, Aoxiang Li, Finlay Maguire, Patryk Aftanas, Jason R. Smith, and 13 others The Journal of Infectious Diseases · 11 citations
4. Pathogenesis and transmission of SARS-CoV-2 D614G, Alpha, Gamma, Delta, and Omicron variants in golden hamsters Andra Banete, Bryan D. Griffin, Juan Carlos Corredor, Emily Chien, Lily Yip, T. Gunawardena, Kuganya Nirmalarajah, Jady Liang, Yaejin Lee, Alexander Leacy, Sara Pagliarani, Richard de Borja, Finlay Maguire, and 22 others npj Viruses · 9 citations
5. Fixing the plumbing: Building interoperability between wastewater genomic surveillance datasets and systems using the PHA4GE contextual data specification Jillian S. Paull, Charlotte Barclay, Rhiannon Cameron, Damion Dooley, Ivan Gill, Dilip Abraham, Remigio Arteaga, Julián Carrillo‐Reyes, Bárbara Ghiglione, María Sol Haim, John Juma, Waqasuddin Khan, Finlay Maguire, and 40 others OSF Preprints · 7 citations
6. CARD k-mers: Unmasking the pathogen hosts and genomic contexts of antimicrobial resistance genes in metagenomic sequences Mateusz A. Wlodarski, Tammy T. Y. Lau, Brian P. Alcock, Amogelang R. Raphenya, Tiffany E. Ta, Finlay Maguire, Robert G. Beiko, Andrew G. McArthur bioRxiv · 5 citations
7. De Novo Genome Sequence Assembly of the RNAi-Tractable Paramecium bursaria 186b: An Endosymbiotic Model System Guy Leonard, Benjamin H. Jenkins, Fiona R. Savory, Estelle Kilias, Finlay Maguire, David S. Milner, Thomas A. Richards Genome Biology and Evolution · 4 citations
8. High host specificity of alphacoronaviruses in Nearctic, insectivorous bats Jonathon D. Kotwa, Arkadeb Bhuinya, Winfield Yim, Giulia Gallo, Pahul Singh, Qiang Liu, Anil Kumar, Emily Chien, Aaron Hou, Hsien-Yao Chee, Juliette Blais-Savoie, Lily Yip, Finlay Maguire, and 8 others Research Square · 4 citations
9. Comparison of pharyngeal and invasive isolates of Streptococcus pyogenes by whole-genome sequencing in Toronto, Canada Joseph J. Zeppa, Ellen G. Avery, Patryk Aftanas, Erin Choi, Simone Uleckas, Prachi Patel, Nicholas Waglechner, Hubert Jimenez, Christie Vermeiren, Kevin Katz, Xena X. Li, Finlay Maguire, Robert Kozak Microbiology Spectrum · 3 citations
10. Identification of patient demographic, clinical, and SARS-CoV-2 genomic factors associated with severe COVID-19 using supervised machine learning: a retrospective multicenter study Kuganya Nirmalarajah, Patryk Aftanas, Shiva Barati, Emily Chien, Gloria Crowl, Amna Faheem, Lubna Farooqi, Alainna Jamal, Saman Khan, Jonathon D. Kotwa, Angel X. Li, Mohammad Mozafarihashjin, Finlay Maguire, and 12 others BMC Infectious Diseases · 2 citations
11. Some assembly required: Comparison of bioinformatic pipelines for analysis of viral metagenomic sequencing from nosocomial respiratory virus outbreaks Assad Alhaboub, Natalie M. Deschenes, Xena X. Li, Victoria R. Williams, Kevin Katz, So Yeon Park, Patryk Aftanas, Henry Wong, Calvin Sjaarda, Kyla Tozer, Finlay Maguire, Jerome A. Leis, Prameet M. Sheth, Robert Kozak Journal of Clinical Virology · 1 citation
12. Socioeconomic Status and Choice of Primary Management of Stress Urinary Incontinence: A Retrospective Cohort Study Sarah Wozney, Finlay Maguire, Jocelyn Stairs Journal of Obstetrics and Gynaecology Canada · 1 citation
13. Evaluation of Phenotypic and Genotypic Susceptibility Testing Methods for Newer β-lactam/β-lactamase Inhibitor Combinations in Multidrug Resistant Pseudomonas aeruginosa Clayton W. Hall, Nicholas Waglechner, E C Choi, Patryk Aftanas, Kevin Katz, Christie Vermeiren, Finlay Maguire, Robert Kozak, Xena X. Li The Journal of Infectious Diseases
14. Beyond “Women’s” Health: A Natural Language Processing Analysis of Trends in Gender-Neutral Language Use Yann Guerin, Finlay Maguire, Aisling Clancy, Jocelyn Stairs Journal of Obstetrics and Gynaecology Canada
15. Episiotomy on TikTok: Assessing Misinformation and Information Quality Shared on a Popular Social Media Platform Adelaide Q. Scott, Chelsea Harris, Allyson Cruickshank, Finlay Maguire, Jocelyn Stairs International Urogynecology Journal
16. Best of Both Worlds? Optimising Graph-Based Antimicrobial Resistance Gene Profiling in Long and Short-Read Metagenomes David Burke James Mahoney, Finlay Maguire bioRxiv (Cold Spring Harbor Laboratory)

2024

1. Stochastic Gender-Based Violence: How Incels Justify and Encourage Sexualized Violence Against Women Meghan Gosse, Michael Halpin, Finlay Maguire Violence Against Women · 46 citations
2. The Emergence of the Incel Community as a Misogyny-Motivated Terrorist Threat Demeter Lockyer, Michael Halpin, Finlay Maguire Terrorism and Political Violence · 37 citations
3. hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling Catarina Inês Mendes, Emma Griffiths, Alex Manuele, Daniel Fornika, Simon H. Tausch, Thanh Le-Viet, Jody Phelan, Conor J. Meehan, Amogelang R. Raphenya, Brian Alcock, Elizabeth Culp, Federico Lorenzo, Finlay Maguire, and 28 others bioRxiv (Cold Spring Harbor Laboratory) · 25 citations
4. Identification of key drivers of antimicrobial resistance in Enterococcus using machine learning Jee In Kim, Alexander Manuele, Finlay Maguire, Rahat Zaheer, Tim A. McAllister, Robert G. Beiko Canadian Journal of Microbiology · 12 citations
5. SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes Jalees A. Nasir, Finlay Maguire, Kendrick M. Smith, Emily M. Panousis, Sheridan J.C. Baker, Patryk Aftanas, Amogelang R. Raphenya, Brian Alcock, Hassaan Maan, Natalie Knox, Arinjay Banerjee, Karen Mossman, and 5 others NAR Genomics and Bioinformatics · 2 citations
6. Utility of hybrid whole genome sequencing in assessing potential nosocomial VIM transmission David Burke James Mahoney, Xena X. Li, Patryk Aftanas, Christie Vermeiren, Robert Kozak, Kevin Katz, Finlay Maguire Antimicrobial Stewardship & Healthcare Epidemiology

2023

1. Prevalence of Low-Frequency, Antiviral Resistance Variants in SARS-CoV-2 Isolates in Ontario, Canada, 2020-2023 Calvin Sjaarda, Lynette Lau, Jared T. Simpson, Ramzi Fattouh, Mia J. Biondi, Finlay Maguire, Aaron Campigotto, Yujia Feng, Kyla Tozer, Henry Wong, Wilson W. L. Sung, Sean Kim, Christian R. Marshall, Prameet M. Sheth, Robert Kozak JAMA Network Open · 20 citations
2. Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications Ruth Timme, Zahra Waheed, arita@nig.ac.jp, Duncan MacCannell, Finlay Maguire, Robert A. Petit, Andrew J. Page, Catarina Inês Mendes, Muhammad Ibtisam Nasar, Paul E. Oluniyi, Andrea D. Tyler, Amogelang R. Raphenya, and 11 others Microbial Genomics · 10 citations
3. PHA4GE Quality Control Contextual Data Tags: Standardized Annotations for Sharing Public Health Sequence Datasets with Known Quality Issues to Facilitate Testing and Training Emma Griffiths, Catarina Inês Mendes, Finlay Maguire, Jennifer L. Guthrie, Leonid Chindelevitch, Ilene Karsch‐Mizrachi, Zahra Waheed, Rhiannon Cameron, Kathryn E. Holt, Lee D. Katz, Robert A. Petit, Duncan MacCannell, and 6 others Preprints.org · 9 citations
4. Use of whole genome sequencing to identify low‐frequency mutations in SARS‐CoV‐2 patients treated with remdesivir Kuganya Nirmalarajah, Winfield Yim, Patryk Aftanas, Angel X. Li, Altynay Shigayeva, Lily Yip, Zoë Zhong, Allison McGeer, Finlay Maguire, Samira Mubareka, Robert Kozak Influenza and Other Respiratory Viruses · 7 citations
5. Lachnoanaerobaculum orale bacteremia in a patient with acute myeloid leukemia and stomatitis: An emerging pathogen Nasruddin Sabrie, Sheliza Halani, Finlay Maguire, Patryk Aftanas, Robert Kozak, Nisha Andany IDCases · 5 citations
6. Sarand: Exploring Antimicrobial Resistance Gene Neighborhoods in Complex Metagenomic Assembly Graphs Somayeh Kafaie, Robert G. Beiko, Finlay Maguire bioRxiv (Cold Spring Harbor Laboratory) · 2 citations

2022

1. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database Brian Alcock, William Huynh, Romeo Chalil, Keaton W Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron Petkau, Sohaib A Syed, Kara K. Tsang, Sheridan J.C. Baker, Mugdha Dave, Finlay Maguire, and 32 others Nucleic Acids Research · 2693 citations
2. Machine Learning for Antimicrobial Resistance Prediction: Current Practice, Limitations, and Clinical Perspective Jee In Kim, Finlay Maguire, Kara K. Tsang, Theodore Gouliouris, Sharon J. Peacock, Tim A. McAllister, Andrew G. McArthur, Robert G. Beiko Clinical Microbiology Reviews · 300 citations
3. Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission Bradley Pickering, Oliver Lung, Finlay Maguire, Peter Kruczkiewicz, Jonathon D. Kotwa, Tore Buchanan, Marianne Gagnier, Jennifer L. Guthrie, Claire M. Jardine, Alex Marchand‐Austin, Ariane Massé, Heather McClinchey, and 28 others Nature Microbiology · 226 citations
4. Highly divergent white-tailed deer SARS-CoV-2 with potential deer-to-human transmission Bradley Pickering, Oliver Lung, Finlay Maguire, Peter Kruczkiewicz, Jonathon D. Kotwa, Tore Buchanan, Marianne Gagnier, Jennifer L. Guthrie, Claire M. Jardine, Alex Marchand‐Austin, Ariane Massé, Heather McClinchey, and 27 others bioRxiv (Cold Spring Harbor Laboratory) · 65 citations
5. Men who Hate Women: The Misogyny of Involuntarily Celibate Men Michael Halpin, Norann Richard, Kayla Preston, Meghan Gosse, Finlay Maguire New Media and Society · 63 citations
6. Ten quick tips for deep learning in biology Benjamin D. Lee, Anthony Gitter, Casey S. Greene, Sebastian Raschka, Finlay Maguire, Alexander Titus, Michael D. Kessler, Alexandra Lee, Marc G. Chevrette, Paul A. Stewart, Thiago Britto‐Borges, Evan M. Cofer, and 8 others PLoS Computational Biology · 60 citations
7. Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package Emma Griffiths, Ruth Timme, Catarina Inês Mendes, Andrew J. Page, Nabil-Fareed Alikhan, Daniel Fornika, Finlay Maguire, Josefina Campos, Daniel J. Park, Idowu B. Olawoye, Paul E. Oluniyi, Dominique Anderson, and 21 others GigaScience · 59 citations
8. Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents Haley Sanderson, Kristen L. Gray, Alexander Manuele, Finlay Maguire, Amjad Khan, Chaoyue Liu, Chandana Navanekere Rudrappa, John J. Nash, James A. Robertson, Kyrylo Bessonov, Martins Oloni, Brian Alcock, and 10 others bioRxiv (Cold Spring Harbor Laboratory) · 35 citations
9. Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada Angela McLaughlin, Vincent Montoya, Rachel L Miller, Gideon J Mordecai, Michael Worobey, Art FY Poon, Jeffrey B Joy eLife · 35 citations
10. Survival-based CRISPR genetic screens across a panel of permissive cell lines identify common and cell-specific SARS-CoV-2 host factors Katherine Chan, Adrian Granda Farias, Hunsang Lee, Furkan Guvenc, Patricia Mero, Kevin R. Brown, Henry N. Ward, Maximilian Billmann, Kamaldeep Aulakh, Audrey Astori, Shahan Haider, Edyta Marcon, Finlay Maguire, and 17 others Heliyon · 34 citations
11. A solider and a victim: Masculinity, violence, and incels celebration of Marc Lépine Michael Halpin, Kayla Preston, Dem Lockyer, Finlay Maguire Canadian Review of Sociology/Revue canadienne de sociologie · 28 citations
12. Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing Amogelang R. Raphenya, James A. Robertson, Casper Jamin, Leonardo de Oliveira Martins, Finlay Maguire, Andrew G. McArthur, John P. Hays Scientific Data · 25 citations
13. Genomic and transcriptomic characterization of Delta SARS-CoV-2 infection in free-ranging white-tailed deer ( Odocoileus virginianus ) Jonathon D. Kotwa, Briallen Lobb, Ariane Massé, Marianne Gagnier, Patryk Aftanas, Arinjay Banerjee, Andra Banete, Juliette Blais-Savoie, Jeff Bowman, Tore Buchanan, Hsien-Yao Chee, Peter Kruczkiewicz, Finlay Maguire, and 9 others bioRxiv (Cold Spring Harbor Laboratory) · 23 citations
14. Immunogenicity of Convalescent and Vaccinated Sera Against Clinical Isolates of Ancestral SARS-CoV-2, Beta, Delta, and Omicron Variants Arinjay Banerjee, J. Lew, Andrea Kroeker, Kaushal Baid, Patryk Aftanas, Kuganya Nirmalarajah, Finlay Maguire, Robert Kozak, Ryan McDonald, Amanda Lang, Volker Gerdts, Sharon E. Straus, and 11 others SSRN Electronic Journal · 21 citations
15. Prevalence and Risk Factors for Urinary Incontinence in Nulliparous Women: A Contemporary, Population-Based Cohort Study Nathalie Kupfer, Aisling A. Clancy, Finlay Maguire, Jocelyn Stairs Urogynecology · 20 citations
16. The role of the environment in transmission of vancomycin-resistant Enterococcus: A proof-of-concept study Charlie Tan, Amber Linkenheld-Struk, Victoria Williams, Rob Kozak, Ghulam Dhabaan, Lorraine Maze Dit Mieusement, Natasha Salt, Finlay Maguire, Adrienne K Chan, Jerome A. Leis Antimicrobial Stewardship & Healthcare Epidemiology · 7 citations
17. Comparison of SARS-CoV-2 Viral Loads in the Nasal Mucosa of Patients Infected With BA.1, BA.2, or BA.5 Omicron Lineages Kyla Tozer, Calvin Sjaarda, Emily Moslinger, Henry Wong, Samira Mubareka, Finlay Maguire, Ramzi Fattouh, Danielle Brabant-Kirwan, Robert Kozak, Prameet M. Sheth Open Forum Infectious Diseases · 7 citations
18. Persistent infection with severe acute respiratory coronavirus virus 2 (SARS-CoV-2) in a patient with untreated human immunodeficiency virus (HIV) Alice Zhabokritsky, Samira Mubareka, Robert Kozak, Finlay Maguire, Lily Yip, Paul S. F. Yip, Jeff Powis Infection Control and Hospital Epidemiology · 4 citations
19. The Newcomer Well Woman Clinic: A Cross-Sectional Evaluation of an Innovative Care Model to Support the Sexual and Reproductive Health Needs of Refugee Women Aditi Sivakumar, Karla Willows, Finlay Maguire, Jocelyn Stairs Research Square · 2 citations

2021

1. The Black Pill: New Technology and the Male Supremacy of Involuntarily Celibate Men Kayla Preston, Michael Halpin, Finlay Maguire Men and Masculinities · 183 citations
2. Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance Kara K. Tsang, Finlay Maguire, Haley L. Zubyk, Sommer Chou, Arman Edalatmand, Gerard D. Wright, Robert G. Beiko, Andrew G. McArthur Microbial Genomics · 25 citations
3. Emergent RNA–RNA interactions can promote stability in a facultative phototrophic endosymbiosis Benjamin H. Jenkins, Finlay Maguire, Guy Leonard, Joshua D Eaton, Steven West, Benjamin E. Housden, David S. Milner, Thomas A. Richards Proceedings of the National Academy of Sciences · 24 citations
4. Characterization of the RNA-interference pathway as a tool for reverse genetic analysis in the nascent phototrophic endosymbiosis, Paramecium bursaria Benjamin H. Jenkins, Finlay Maguire, Guy Leonard, Joshua D Eaton, Steven West, Benjamin E. Housden, David S. Milner, Thomas A. Richards Royal Society Open Science · 22 citations
5. Canadian national COVID-19 genomics surveillance priorities for existing and emerging variants of concern GCC COVID, … Canada Communicable Disease Report · 3 citations
6. CanCOGeN interim recommendations for naming, identifying, and reporting SARS-CoV-2 variants of concern E Griffiths, J Tanner, N Knox, W Hsiao, G Van Domselaar SARS-CoV-2 variant classifications and definitions. CDC. gov. Centers for …, 2021 · 3 citations
7. Cannabinoid Therapy in Female Pelvic Medicine and Reconstructive Surgery: Current Evidence and Future Directions Jocelyn Stairs, Finlay Maguire, Christine Lehmann, Ashley Cox Current Bladder Dysfunction Reports · 1 citation
8. AMR-Hackathon-2021/benchmarking_datasets: v1. 1.0 L De Oliveira Martins, C Jamin, F Maguire Zenodo, 2021 · 1 citation

2020

1. Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands Finlay Maguire, Baofeng Jia, Kristen L. Gray, Wing Yin Venus Lau, Robert G. Beiko, Fiona S. L. Brinkman Microbial Genomics · 211 citations
2. A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture Jalees A. Nasir, Robert Kozak, Patryk Aftanas, Amogelang R. Raphenya, Kendrick M. Smith, Finlay Maguire, Hassaan Maan, Muhannad Alruwaili, Arinjay Banerjee, Hamza Mbareche, Brian Alcock, Natalie Knox, and 5 others Viruses · 108 citations
3. PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data Michael A. Peabody, Wing Yin Venus Lau, Gemma R Hoad, Baofeng Jia, Finlay Maguire, Kristen L. Gray, Robert G. Beiko, Fiona S. L. Brinkman Bioinformatics · 21 citations
4. Motivation to access laparoscopic skills training: Results of a Canadian survey of obstetrics and gynecology residents Jocelyn Stairs, Bradley W. Bergey, Finlay Maguire, Stephanie Scott PLoS ONE · 12 citations

2019

1. CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database Brian Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna‐Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y Min, Anatoly Miroshnichenko, Finlay Maguire, and 21 others Nucleic Acids Research · 4053 citations
2. Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists Jeremy G. Wideman, Adam Monier, Raquel Rodríguez‐Martínez, Guy Leonard, Emily Cook, Camille Poirier, Finlay Maguire, David S. Milner, Nicholas A. T. Irwin, Karen Moore, Alyson E. Santoro, Patrick J. Keeling, Alexandra Z. Worden, Thomas A. Richards Nature Microbiology · 68 citations
3. Environment-dependent fitness gains can be driven by horizontal gene transfer of transporter-encoding genes David S. Milner, Victoria Attah, Emily Cook, Finlay Maguire, Fiona R. Savory, Mark Morrison, Carolin A. Müller, Peter G. Foster, Nicholas J. Talbot, Guy Leonard, Thomas A. Richards Proceedings of the National Academy of Sciences · 67 citations
4. Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning Finlay Maguire, Muhammad Attiq Rehman, Catherine D. Carrillo, Moussa S. Diarra, Robert G. Beiko mSystems · 46 citations
5. Intracellular Infection of Diverse Diatoms by an Evolutionary Distinct Relative of the Fungi Aurélie Chambouvet, Adam Monier, Finlay Maguire, Sarah Itoïz, Javier del Campo, Philippe Eliès, Bente Edvardsen, Wenche Eikreim, Thomas A. Richards Current Biology · 38 citations
6. A resident-led clinic that promotes the health of refugee women through advocacy and partnership Jocelyn Stairs, Navpreet Bal, Finlay Maguire, Heather Scott Canadian Medical Education Journal · 1 citation

2018

1. The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform Thomas C Matthews, Franklin R Bristow, Emma J Griffiths, Aaron Petkau, Josh Adam, Damion Dooley, Peter Kruczkiewicz, John Curatcha, Jennifer Cabral, Dan Fornika, Geoffrey L. Winsor, Melanie Courtot, and 20 others bioRxiv · 68 citations
2. Comparative genomic analysis of the ‘pseudofungus’Hyphochytrium catenoides Guy Leonard, Aurélie Labarre, David S. Milner, Adam Monier, Darren M. Soanes, Jeremy G. Wideman, Finlay Maguire, Sam Stevens, Divya Sain, Xavier Grau‐Bové, Arnau Sebé-Pedrós, Jason Stajich, and 5 others Open Biology · 43 citations

2016

1. A multi-omic analysis of the photosynthetic endosymbioses of Paramecium bursaria Finlay Maguire UCL Discovery (University College London) · 1 citation

2015

1. Molecular diversity and distribution of marine fungi across 130 European environmental samples Thomas A. Richards, Guy Leonard, Frédéric Mahé, Javier del Campo, Sarah Romac, Meredith D. M. Jones, Finlay Maguire, Micah Dunthorn, Colomban de Vargas, Ramón Massana, Aurélie Chambouvet Proceedings of the Royal Society B Biological Sciences · 218 citations
2. Cryptic infection of a broad taxonomic and geographic diversity of tadpoles by Perkinsea protists Aurélie Chambouvet, David J. Gower, Miloslav Jirkú, Michael J. Yabsley, Andrew K. Davis, Guy Leonard, Finlay Maguire, Thomas M. Doherty‐Bone, Gabriela B. Bittencourt-Silva, Mark Wilkinson, Thomas A. Richards Proceedings of the National Academy of Sciences · 90 citations

2014

1. Diverse molecular signatures for ribosomally ‘active’ Perkinsea in marine sediments Aurélie Chambouvet, Cédric Berney, Sarah Romac, Stéphane Audic, Finlay Maguire, Colomban de Vargas, Thomas A. Richards BMC Microbiology · 50 citations
2. Organelle Evolution: A Mosaic of ‘Mitochondrial’ Functions Finlay Maguire, Thomas A. Richards Current Biology · 36 citations
3. A Balloon-Based Payload for Exposing Microorganisms in the Stratosphere (E-MIST) David J. Smith, Prital J. Thakrar, Anthony E. Bharrat, Adam G. Dokos, Teresa L. Kinney, Leandro M. James, Michael Lane, Christina L. Khodadad, Finlay Maguire, Phillip Maloney, Nicole L. Dawkins Gravitational and Space Research · 22 citations
4. Complex Patterns of Gene Fission in the Eukaryotic Folate Biosynthesis Pathway Finlay Maguire, Fiona L. Henriquez, Guy Leonard, Joel B. Dacks, Matthew W. Brown, Thomas A. Richards Genome Biology and Evolution · 18 citations